Search | Virtual Health Library

1.

Genomic surveillance for antimicrobial resistance - a One Health perspective.

Djordjevic, Steven P; Jarocki, Veronica M; Seemann, Torsten; Cummins, Max L; Watt, Anne E; Drigo, Barbara; Wyrsch, Ethan R; Reid, Cameron J; Donner, Erica; Howden, Benjamin P.

Nat Rev Genet ; 25(2): 142-157, 2024 Feb.

Article in English | MEDLINE | ID: mdl-37749210

2.

High performance Legionella pneumophila source attribution using genomics-based machine learning classification.

Buultjens, Andrew H; Vandelannoote, Koen; Mercoulia, Karolina; Ballard, Susan; Sloggett, Clare; Howden, Benjamin P; Seemann, Torsten; Stinear, Timothy P.

Appl Environ Microbiol ; 90(3): e0129223, 2024 Mar 20.

Article in English | MEDLINE | ID: mdl-38289130

3.

Genomic Evidence of In-Flight SARS-CoV-2 Transmission, India to Australia, April 2021.

Hogarth, Freya; Coffey, Pasqualina; Goddard, Laura; Lewis, Sarah; Labib, Shereen; Wilmot, Mathilda; Andersson, Patiyan; Sherry, Norelle; Seemann, Torsten; Howden, Benjamin P; Freeman, Kevin; Baird, Robert; Hosegood, Ian; McDermott, Kathleen; Walsh, Nick; Polkinghorne, Ben; Marshall, Catherine; Davies, Jane; Krause, Vicki; Meumann, Ella M.

Emerg Infect Dis ; 28(7): 1527-1530, 2022 07.

Article in English | MEDLINE | ID: mdl-35483111

4.

Unstable chromosome rearrangements in Staphylococcus aureus cause phenotype switching associated with persistent infections.

Guérillot, Romain; Kostoulias, Xenia; Donovan, Liam; Li, Lucy; Carter, Glen P; Hachani, Abderrahman; Vandelannoote, Koen; Giulieri, Stefano; Monk, Ian R; Kunimoto, Mayu; Starrs, Lora; Burgio, Gaétan; Seemann, Torsten; Peleg, Anton Y; Stinear, Timothy P; Howden, Benjamin P.

Proc Natl Acad Sci U S A ; 116(40): 20135-20140, 2019 10 01.

Article in English | MEDLINE | ID: mdl-31527262

5.

Viral Genomics to Inform Infection-control Response in Occupational Coronavirus Disease 2019 (COVID-19) Transmission.

Whyler, Naomi C A; Sherry, Norelle L; Lane, Courtney R; Seemann, Torsten; Andersson, Patiyan; Sait, Michelle; Graham, Maryza; Korman, Tony M; Howden, Benjamin P; Stuart, Rhonda L.

Clin Infect Dis ; 73(7): e1881-e1884, 2021 10 05.

Article in English | MEDLINE | ID: mdl-32927479

6.

Search and Contain: Impact of an Integrated Genomic and Epidemiological Surveillance and Response Program for Control of Carbapenemase-producing Enterobacterales.

Lane, Courtney R; Brett, Judith; Schultz, Mark; Gorrie, Claire L; Stevens, Kerrie; Cameron, Donna R M; St George, Siobhan; van Diemen, Annaliese; Easton, Marion; Stuart, Rhonda L; Sait, Michelle; Peleg, Anton Y; Stewardson, Andrew J; Cheng, Allen C; Spelman, Denis W; Waters, Mary Jo; Ballard, Susan A; Sherry, Norelle L; Williamson, Deborah A; Romanes, Finn; Sutton, Brett; Kwong, Jason C; Seemann, Torsten; Goncalves da Silva, Anders; Stephens, Nicola; Howden, Benjamin P.

Clin Infect Dis ; 73(11): e3912-e3920, 2021 12 06.

Article in English | MEDLINE | ID: mdl-32663248

7.

Genomic Epidemiology and Antimicrobial Resistance Mechanisms of Imported Typhoid in Australia.

Ingle, Danielle J; Andersson, Patiyan; Valcanis, Mary; Wilmot, Mathilda; Easton, Marion; Lane, Courtney; Barden, Jessica; Gonçalves da Silva, Anders; Seemann, Torsten; Horan, Kristy; Ballard, Susan A; Sherry, Norelle L; Williamson, Deborah A; Howden, Benjamin P.

Antimicrob Agents Chemother ; 65(12): e0120021, 2021 11 17.

Article in English | MEDLINE | ID: mdl-34543095

8.

Incursions of Candida auris into Australia, 2018.

Lane, Courtney R; Seemann, Torsten; Worth, Leon J; Easton, Marion; Pitchers, William; Wong, Jenny; Cameron, Donna; Azzato, Francesca; Bartolo, Richard; Mateevici, Cristina; Marshall, Caroline; Slavin, Monica A; Howden, Benjamin P; Williamson, Deborah A.

Emerg Infect Dis ; 26(6): 1326-1328, 2020 06.

Article in English | MEDLINE | ID: mdl-32213261

9.

Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring bla_CTX-M-27 in Victoria, Australia.

Ingle, Danielle J; Andersson, Patiyan; Valcanis, Mary; Barnden, Jessica; da Silva, Anders Gonçalves; Horan, Kristy A; Seemann, Torsten; Easton, Marion; Williamson, Deborah A; Sherry, Norelle L; Howden, Benjamin P.

Antimicrob Agents Chemother ; 64(12)2020 11 17.

Article in English | MEDLINE | ID: mdl-33020158

10.

Determination of the small RNA GcvB regulon in the Gram-negative bacterial pathogen Pasteurella multocida and identification of the GcvB seed binding region.

Gulliver, Emily L; Wright, Amy; Lucas, Deanna Deveson; Mégroz, Marianne; Kleifeld, Oded; Schittenhelm, Ralf B; Powell, David R; Seemann, Torsten; Bulitta, Jürgen B; Harper, Marina; Boyce, John D.

RNA ; 24(5): 704-720, 2018 05.

Article in English | MEDLINE | ID: mdl-29440476

11.

Isolation and rapid sharing of the 2019 novel coronavirus (SARS-CoV-2) from the first patient diagnosed with COVID-19 in Australia.

Caly, Leon; Druce, Julian; Roberts, Jason; Bond, Katherine; Tran, Thomas; Kostecki, Renata; Yoga, Yano; Naughton, William; Taiaroa, George; Seemann, Torsten; Schultz, Mark B; Howden, Benjamin P; Korman, Tony M; Lewin, Sharon R; Williamson, Deborah A; Catton, Mike G.

Med J Aust ; 212(10): 459-462, 2020 06.

Article in English | MEDLINE | ID: mdl-32237278

12.

Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia.

Ingle, Danielle J; Easton, Marion; Valcanis, Mary; Seemann, Torsten; Kwong, Jason C; Stephens, Nicola; Carter, Glen P; Gonçalves da Silva, Anders; Adamopoulos, James; Baines, Sarah L; Holt, Kathryn E; Chow, Eric P F; Fairley, Christopher K; Chen, Marcus Y; Kirk, Martyn D; Howden, Benjamin P; Williamson, Deborah A.

Clin Infect Dis ; 69(9): 1535-1544, 2019 10 15.

Article in English | MEDLINE | ID: mdl-30615105

13.

Remodeling of pSK1 Family Plasmids and Enhanced Chlorhexidine Tolerance in a Dominant Hospital Lineage of Methicillin-Resistant Staphylococcus aureus.

Baines, Sarah L; Jensen, Slade O; Firth, Neville; Gonçalves da Silva, Anders; Seemann, Torsten; Carter, Glen P; Williamson, Deborah A; Howden, Benjamin P; Stinear, Timothy P.

Antimicrob Agents Chemother ; 63(5)2019 05.

Article in English | MEDLINE | ID: mdl-30783008

14.

Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016.

Sherry, Norelle L; Lane, Courtney R; Kwong, Jason C; Schultz, Mark; Sait, Michelle; Stevens, Kerrie; Ballard, Susan; Gonçalves da Silva, Anders; Seemann, Torsten; Gorrie, Claire L; Stinear, Timothy P; Williamson, Deborah A; Brett, Judith; van Diemen, Annaliese; Easton, Marion; Howden, Benjamin P.

J Clin Microbiol ; 57(9)2019 09.

Article in English | MEDLINE | ID: mdl-31315956

15.

Genomic investigation of Staphylococcus aureus recovered from Gambian women and newborns following an oral dose of intra-partum azithromycin.

Bojang, Abdoulie; Baines, Sarah L; Donovan, Liam; Guerillot, Romain; Stevens, Kerrie; Higgs, Charlie; Bottomley, Christian; Secka, Ousman; Schultz, Mark B; Gonçalves da Silva, Anders; Seemann, Torsten; Stinear, Timothy P; Roca, Anna; Howden, Benjamin P.

J Antimicrob Chemother ; 74(11): 3170-3178, 2019 11 01.

Article in English | MEDLINE | ID: mdl-31424550

16.

Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria.

Boritsch, Eva C; Khanna, Varun; Pawlik, Alexandre; Honoré, Nadine; Navas, Victor H; Ma, Laurence; Bouchier, Christiane; Seemann, Torsten; Supply, Philip; Stinear, Timothy P; Brosch, Roland.

Proc Natl Acad Sci U S A ; 113(35): 9876-81, 2016 08 30.

Article in English | MEDLINE | ID: mdl-27528665

17.

Biosynthesis and Ether-Bridge Formation in Nargenicin Macrolides.

Pidot, Sacha J; Herisse, Marion; Sharkey, Liam; Atkin, Liselle; Porter, Jessica L; Seemann, Torsten; Howden, Benjamin P; Rizzacasa, Mark A; Stinear, Timothy P.

Angew Chem Int Ed Engl ; 58(12): 3996-4001, 2019 03 18.

Article in English | MEDLINE | ID: mdl-30677204

18.

Whole genome analysis reveals the diversity and evolutionary relationships between necrotic enteritis-causing strains of Clostridium perfringens.

Lacey, Jake A; Allnutt, Theodore R; Vezina, Ben; Van, Thi Thu Hao; Stent, Thomas; Han, Xiaoyan; Rood, Julian I; Wade, Ben; Keyburn, Anthony L; Seemann, Torsten; Chen, Honglei; Haring, Volker; Johanesen, Priscilla A; Lyras, Dena; Moore, Robert J.

BMC Genomics ; 19(1): 379, 2018 May 22.

Article in English | MEDLINE | ID: mdl-29788909

19.

Emergence of High-Level Colistin Resistance in an Acinetobacter baumannii Clinical Isolate Mediated by Inactivation of the Global Regulator H-NS.

Deveson Lucas, Deanna; Crane, Bethany; Wright, Amy; Han, Mei-Ling; Moffatt, Jennifer; Bulach, Dieter; Gladman, Simon L; Powell, David; Aranda, Jesus; Seemann, Torsten; Machado, Diana; Pacheco, Teresa; Marques, Teresa; Viveiros, Miguel; Nation, Roger; Li, Jian; Harper, Marina; Boyce, John D.

Antimicrob Agents Chemother ; 62(7)2018 07.

Article in English | MEDLINE | ID: mdl-29712662

20.

Human blood MAIT cell subsets defined using MR1 tetramers.

Gherardin, Nicholas A; Souter, Michael Nt; Koay, Hui-Fern; Mangas, Kirstie M; Seemann, Torsten; Stinear, Timothy P; Eckle, Sidonia Bg; Berzins, Stuart P; d'Udekem, Yves; Konstantinov, Igor E; Fairlie, David P; Ritchie, David S; Neeson, Paul J; Pellicci, Daniel G; Uldrich, Adam P; McCluskey, James; Godfrey, Dale I.

Immunol Cell Biol ; 96(5): 507-525, 2018 05.

Article in English | MEDLINE | ID: mdl-29437263

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